The VMware Compliance Checker for vSphere ( Free Compliance Checker for VMware vSphere ) compares your vSphere ESXi host configuration against the vSphere Hardening Guidelines. As such it's not a destructive tool as it just reads data. It's not a tool that performs potentially destructive testing like a penetration test tool. Of course any new system or script you run against your environment has the possibility of causing problems, however the chances of the compliance checker impacting your VMs is extremely low.
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